South Africa | PAGSA Confirmation on Section 11(nA) Refund

South Africa | PAGSA Confirmation on Section 11(nA) Refund

We are pleased to share clarity received from the Payroll Authors Group of South Africa (PAGSA) on the proper application of the new section 11(nA) and paragraph 2(4)(g) (of the Fourth Schedule) tax deductions. This guidance is critical for administering refunds and corrections in the payroll system, effective 1 March 2025.

For system implementation details regarding this functionality, please refer to DLP release notes 76567 and  97340 (Section 11(nA) Employee Refunds – New Tax Deduction) and (System enhancement on tax codes 4588 and 4589).

Key legislative amendments (effective 1 March 2025)

These amendments were introduced primarily to accommodate the forthcoming requirement for SARS monthly payroll reporting.

  • Section 11(nA) Amendment: The insertion of the words "or is" in Section 11(nA) clarifies that a deduction for a refunded amount is permitted only if the amount was or is included in the taxable income of that person. The term "or is" now allows the deduction to be applied in the payroll during the same tax year the amount was refunded, addressing the prior difficulty where the deduction was restricted to refunds occurring after the end of the initial year of assessment.
  • Paragraph 2(4)(g) Introduction: This new paragraph allows the deduction for the refunded amount (which was previously included in taxable income) to be applied in the payroll for PAYE calculation purposes. This is intended to assist the employee's cash flow by compensating for the PAYE that was withheld earlier.
    • Proviso: If the refund deduction exceeds the remuneration for the month, the excess can be deducted in the next succeeding month, provided it is within the same year of assessment. Any excess amount not deducted by the end of the tax year must be claimed by the employee via the ITR12 assessment process.

The Core Principle: accrual determines the adjustment or refund method

To ensure compliance when adjusting remuneration, the critical question is: "Did the remuneration amount that must be adjusted accrue?".

  • Path 1: Remuneration accrued (YES)
    • This applies to payments made under a contract with repayment conditions (e.g., Sign-on/Retention bonuses or Commission Clawbacks). In these cases, the employee was initially entitled to the amount.
    • Adjustment Method: Refund Deduction Adjustment.
    • Statutory Provision: Section 11(nA) and Paragraph 2(4)(g) must be applied to compensate for the PAYE originally withheld.
    • Tax Certificate Codes: Use Code 4042 (Tax Deduction) and Code 4588 (Refunded amount).
  • Path 2: Remuneration did not accrue (NO)
    • This applies to Payroll Administration Errors (e.g., over-payment, payment to the wrong employee, or incorrect classification). The amount was not intended to be for the benefit of the employee and therefore did not accrue.
    • Adjustment Method: Payroll Correction Adjustment.
    • Statutory Provision: Section 11(nA) and Paragraph 2(4)(g) must not be applied.
    • Tax Certificate Codes: Codes 4042 and 4588 are NOT used. The remuneration is corrected by reporting the adjusted amount under the original, correct income code (e.g., salary code 3601).

What qualifies as a "refund"?

SARS accepts two methods for the amount to be considered a "refund" under s11(nA) and par 2(4)(g):

  • Bank-to-bank Repayment: The employee repays the full amount of money from their bank account into the employer's bank account. This is sometimes referred to as a 'Refund Outside the Payroll'.
  • Reduction of 'Net Pay' (Recoupment): A deduction from the employee's after-tax pay (net pay) by agreement to settle the debt25. This is sometimes referred to as a 'Refund Inside the Payroll' and is supported by the legal understanding of 'recoupment'.

Important notes on the refund deduction method

  • Bursaries: A repayment of a bursary that qualified for exemption under section 10(1)(q) of the Act does not qualify for a s11(nA) deduction. This is because the original amount was exempt and therefore was not "included in the taxable income of that person".
  • Restraint of trade refunds (s11(nB)): Refunds of restraint of trade payments are not allowed as a deduction during the tax year in the payroll, as paragraph 2(4)(g) is not linked to section 11(nB). The refund is typically paid to an ex-employee.
    • The total amount repaid by the ex-employee can be reported on information Code 4589.
    • However, Code 4589 will NOT be used by the ITR12 assessment process, nor does it replace the Refund Confirmation Letter (RCL). The ex-employer must still issue an RCL, and the ex-employee must claim the deduction via the ITR12 process.
  • Impact on other employment taxes and values: While the 2(4)(g) deduction correctly adjusts the PAYE and SDL 'leviable amount’, amounts calculated based on gross remuneration (which is not reduced by the refund deduction) will be unaffected by the deduction. This includes:
    • UIF: SARS confirms there is generally no provision for the refund of UIF as the original amount remains 'remuneration'.
    • ETI (Employment Tax Incentive): The ETI amount remains based on the gross remuneration paid in the initial month.
    • Other Remuneration-Based Values: Values such as the Retirement Fund deduction cap (Section 11F), the commission determination (23(m)), and the Remuneration Proxy are calculated on the gross remuneration amount and are not reduced by the refund deduction in the payroll.
  • Instalments: The par 2(4)(g) deduction can only be applied when the amount is actually refunded. Therefore, if the amount is repaid in instalments, the deduction must be applied for each month in which an instalment is paid.
  • Annualisation: SARS accepts that payrolls may use an 'annualised' remuneration calculation to deduct a large refund amount, provided that the monthly and Year-to-Date (YTD) PAYE remains R0.00 or positive (this functionality will be released in the future).
  • Tax rates: The deduction must be applied in the year the refund is paid, even if the tax rates were higher or lower in the year the original payment was received.
  • Termination/ex-employee refunds: If an ex-employee refunds an amount after employment ends, the par 2(4)(g) deduction cannot be applied if no other remuneration is paid43. If the refunded value cannot be captured in the payroll under Code 4588, the employer must issue a Refund Confirmation Letter (RCL) to the ex-employee to substantiate their s11(nA) deduction claim via the ITR12 assessment process. Employers can refer to SARS Interpretation Note 88 for more information on the RCL, which will also be updated with the new legislation in due course.
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